How To Go To Siquijor From Manila: Best & Cheapest Route

Wondering how to reach this underrated paradise island? We compare the three main routes via Dumaguete, Bohol and Cebu

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Wondering how to get from Manila to Siquijor? Navigating around the Philippines and getting from each island can be interesting with many different options for different types of travellers, and Manila to Siquijor is no exception. If you’re dreaming of the epic island sunsets and serene boat trips then you’ll need to escape the cities and make your way to the islands. This guide compares the cheapest and most efficient ways to go to Siquijor from Manila via Dumaguete, Cebu & Bohol.

In our opinion, Siquijor is one of the Philippines most underrated tourist destinations, often skipped by some backpackers due to it being quiet and laid back, which is maybe why we loved it so much. Dive resorts and hostels line the beachfront of San Juan, making it a perfect base to explore the surrounding oceans and marine life, from giant clams to barracuda and blacktip reef sharks. Read on to find out everything you need to know before embarking on your journey from Manila to Siquijor Island.

How To Get To Siquijor From Manila Map

How to travel from Manila to Siquijor Map

How To Get To Siquijor From Manila Routes

Aeroplane Travel Icon

Flight via Dumaguete

3-4 Hours

From $30-100 pp

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Flight via Bohol

5 Hours

From $30-100 pp

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Flight via Cebu

7 Hours

From $30-100 pp

Where Is Manila In The Philippines

The Philippines is home to over 7,000 islands which can make navigating your holiday tricky and expensive but well worth it. Many tourists start their trip in the bustling capital city of Manila, a well connected hub with the biggest international airport in the Philippines. Home to roughly 14% of the country’s population, Manila can be a hectic place to say the least and a great place to get a feel for the chaos.

Where Is Siquijor In The Philippines

On the opposite side of Manila’s chaos is Siquijor, a small paradise island famous for its black magic and witchcraft by the locals. The island attracts tourists looking to relax on Siquijor’s best beaches and snorkel in the crystal clear surrounding waters. Some of the island’s highlights include Cambugahay Falls, Salagdoong Beach and Mt Bandilaan National Park.

There are three good options to go to Siquijor from Manila which all involve a flight with a connecting ferry, we recommend checking the flight prices of all 3 options and choosing the cheapest.

Our 150+ page Philippines Travel Guide has everything you need to plan the trip of a lifetime!

Sunlight airline for getting around the Philippines Islands

Manila to Siquijor Route Options

Flight via Dumaguete & Connecting Ferry

Aeroplane Travel Icon

Flight via Dumaguete

3-4 Hours

From $30-100 pp

Ferry Travel Icon

Ferry to Siquijor

1-1.5 Hours

From $5 pp

The fastest and most convenient option from Manila to Siquijor is via Dumaguete, which is the closest island next to Siquijor with an airport, meaning it has the shortest connecting ferry. The first step of the journey is an internal flight from Manila Ninoy Aquino (MNL) to Dumaguete Sibulan Airport, you’ll then have to get a connecting tricycle or taxi to the Port. The final part of the journey will be the direct ferry to Siquijor which only takes 1 hour.

This is the quickest way to go from Manila to Siquijor and is also good for people who get seasick due to minimal ferry time.

Steps:

Cambugahay Falls Jungle

Flight via Bohol & Connecting Ferry

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Flight via Bohol

5 Hours

From $30-100 pp

Ferry Travel Icon

Ferry to Siquijor

1.5-2 Hours

From $15 pp

Although the ideal route is via Dumaguete, another option is to fly via Bohol instead. The internal flight prices in the Philippines can fluctuate a lot throughout the different islands and seasons, so it’s worth checking both routes. Once you’ve landed, you’ll then need to make your way from Bohol to Siquijor, with the easiest option being a direct ferry that only runs once per day.

Steps:

The direct ferry to Siquijor from Bohol only runs once a day, so if you want to get from Bohol to Siquijor the same day you land you’ll have to catch that or get a connecting ferry via Dumaguete.

Read more in our Full Guide on Bohol to Siquijor Travel Options

How to get to Siquijor, boat to Siquijor island in the Philippines

Flight via Cebu & Connecting Ferry

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Flight via Cebu

7 Hours

From $30-100 pp

Ferry Travel Icon

Ferry to Siquijor

5 Hours

From $34 pp

The final option to get from Manila to Siquijor is via the island of Cebu, the central hub of the Visayas region of the Philippines. A beautiful island known for its famous Kawasan Falls Canyoneering (which we would highly recommend doing) and the Sardine Run, Cebu should be on your Philippines Itinerary. The first step of this journey is a flight to Cebu City’s Mactan International Airport which is a very popular route with many flight options each day. Then, you’ll need to make your way from Cebu to Siquijor via a 5-6 hour ferry or a bus/taxi to the south of Cebu & then a shorter ferry.

Steps:

Then take one of the Cebu to Siquijor Travel Options:  

Then finally, a tricycle from Siquijor Port to your accommodation.

Read Here For More Information on Getting From Cebu to Siquijor

The Route We Recommend & Our Experience

The most convenient option to go from Manila to Siquijor is a flight via Dumaguete followed by a short ferry. The total travel time should be approximately 3-4 hours depending on flight schedules and ferry times.

In terms of cost, all options involve an internal flight from Manila, however Cebu will most likely offer the cheapest tickets due to popularity and more flights running per day. Arriving in Cebu then gives you a chance to make your way from Cebu to Siquijor via land and two smaller ferries which is a more budget route than one longer direct ferry. 

Booking in advance is also recommended, especially in the Philippines high season (November-April), this will give you the best chance to get cheaper flights. We love 12Go as it allows you to book the local ferries ahead of time rather than last minute at the port. WayAway has also been a really useful flight aggregator price tool we’ve tried out.

Another thing to consider is your itinerary, if you’re planning to visit Cebu or Bohol anyway then add these islands in before visiting Siquijor to break up your journey!

Sunset on Siquijor island, the Philippines

Arriving in Siquijor

Once you’ve arrived in Siquijor Port, you’ll then need to make your way to your hotel or hostel. We recommend staying in San Juan and have written a Siquijor Best Areas to Stay for All Types or Travellers Guide. The island has no public transport options, so the best way to get around is via tricycle or rental scooter.

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Top Things To Do On Siquijor

Top things to do in Siquijor Map

Best Places To Stay In Siquijor

lazy lizard hostel siquijor philippines

$ Budget

Lazy Lizard Hostel

Lazy Lizard is a great budget option for your stay in San Juan. Up from the main road it is quiet, in the jungle and offers scooter hire. There’s options for private rooms or shared dorms.

Apo Diver's Beach Resort in Siquijor, Philippines

$$ Mid-Range

Apo Diver’s Resort

Perhaps you want something more luxury or your here for the diving! Apo Diver’s Resort offers sea views on the beach front with a beautiful pool and chill out spot.

Coco Grove Beach Resort, Siquijor Philippines

$$$ High-End

Coco Grove Beach Resort

Backing onto Tubod Marine Reserve this is a great luxury choice if you love snorkelling. The resort also boasts a large seafront swimming pool, free coffee and breakfast as well as an on-site restaurant.

Spacing

Tips For Visiting Siquijor Island

If you’re visiting Siquijor here are our top travel tips:

  1. Plan your transport – getting to Siquijor can seem confusing so make sure to plan your route and leave early on your travel day.
  2. Arrive early to Cambugahay Falls to miss the crowds and experience the natural beauty of the area, we arrived at 8am.
  3. Eat Local, we had some of our favourite food in the Philippines here, mainly from Roadside Diner!
  4. Rent a scooter to explore the natural attractions. The island is small so it’s the perfect place to learn to ride a scooter, just make sure you wear a helmet.

Tools To Make Your Trip Stress Free

The tools below are ones we genuinely use on every trip. When you book through our links, you help keep this blog alive and we’re truly grateful for that. If you’d like to go a step further, you can always buy us a coffee

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Flight Finder

Compare and book flights

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Hotel Deals

Find the best hotel prices

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Book Ferries & Buses

In-app, on the go tickets

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Earn Travel Miles

Make every penny go further

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Travel Insurance

Protect your journey

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Local Guides

Connect with experts

Thank you for reading and enjoy your adventure. Reach out to us over on Instagram, we always love to hear from people who read our blogs!

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